An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks

This is the ImageJ plugin for the density estimation by fully convolutional networks (DEFCoN) algorithm, an image processing tool for fluorescence spot counting. With this plugin, you can use trained DEFCoN models directly on images from within ImageJ.

See also

  • DEFCoN-ImageJ Wiki - Download site for pre-trained DEFCoN models
  • DEFCoN - Software for training a DEFCoN model
  • ALICA - Automated laser illumination control for Micro-Manager
  • SASS - SMLM acquistion simulation software

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